AnnoTree


AnnoTree version r214 is now available at AnnoTree. This release introduces the GTDB R214 database (updated May 2023) with expanded annotations from KEGG and InterPro member databases. The update leverages data from over 80,000 bacterial and 4,400 archaeal genomes.

Features


Painted phylogenies in three steps

(1) Highlight taxonomies of interest with the annotation or taxonomy search option; (2) Zoom to any level of detail; (3) Download a publication-quality SVG or a NEWICK file.

Reductive Dehalogenase
Summary distribution of reductive dehalogenase

A concise view of taxonomic distribution

Instantly summarize the taxonomic distribution of Pfam protein domains, KEGG orthologs, or TIGRFAM families across all phylogenetic levels.

Details, down to the last residue

Examine and download every annotation confidence score and protein sequence directly from the interface.

Download CSV through pop up
Orders annoted by phylum bands

Taxonomic annotations

Automatically add taxonomic labels to your trees at any taxonomic level.

Cite us


Mendler K, Chen H, Parks DH, Hug LA, Doxey AC. (2019) AnnoTree: visualization and exploration of a functionally annotated microbial tree of life. Nucleic Acids Research 47:4442-4448. doi: http://dx.doi.org/10.1093/nar/gkz246

Team


AnnoTree is developed by the Doxey Lab at the University of Waterloo.

  • Han Chen (core developer)
  • Kerrin Mendler (core developer)
  • Huagang Tan (core developer)
  • Briallen Lobb (tool design)
  • Donovan Parks (GTDB genomic data and TOL)
  • Laura Hug (phylogenomics, case studies, TOL)
  • Andrew Doxey (tool conception/design)